Software containers using Docker / Singularity are a core part of modern data science, found at the heart of Nextflow pipelines. On today's show, we bring on the creator of Nextflow – Paolo Di Tommaso – to tell us the good, the bad and the ugly of containers.
In this episode of the Channels podcast, it’s all about developer experience! 👩🏻💻🎉
Ben Sherman takes Phil Ewels through new and upcoming language improvements in the Nextflow language which will help people writing Nextflow pipelines write code faster, with fewer errors, and of course with beautifully formatted indentation 🤩
In this News and Views episode, Phil Ewels, Chris Hakkaart and Marcel Ribeiro-Dantas play with interactive debuggers in IntelliJ to try to understand what's happening in their pipeline. We also give a first look at plans for a brand new "Nextflow Ambassador" program that we'll be launching soon, as well as a revamped training course that was rescued from the precipice.
In this News and Views episode, Phil Ewels talks to Evan Floden and Harshil Patel from Seqera Labs about automation of pipeline testing, Nextflow Tower CLI and automation. We wrap up with a sneak-preview of some future road map items coming soon to Nextflow Tower.
In this News and Views episode, Phil Ewels and Chris Hakkaart talk to Seqera Labs software engineer Ben Sherman about what's going on "under the hood" with Nextflow. We touch on task provenance, cloud cache databases and task / sub-workflow grouping. Gotta cache 'em all!
In this News and Views episode, Chris Hakkaart and Marcel Ribeiro-Dantas talk to Rob Syme about the exciting new Nextflow training material and ways to learn Nextflow in 2023.
In this News and Views episode, Phil Ewels and Marcel Ribeiro-Dantas talk to Ben Sherman about the exciting work in progress related to the Nextflow language.
In this News and Views episode, Phil Ewels and Chris Hakkaart talk to Júlia Mir Pedrol and Matthias Hörtenhuber - the nf-core infrastructure team.
In this News and Views episode, Phil Ewels talks to Ben Sherman about upcoming features in core Nextflow development: a new CLI v2 interface; submission of job arrays and intermediate file cleanup during runs.
In this News and Views episode, Phil Ewels, Chris Hakkaart and Marcel Ribeiro-Dantas discuss the hottest topics in the Nextflow world.
Today marks 10 years since Paolo Di Tommaso made the first commit for Nextflow!
In this special bonus episode of Channels, Phil Ewels talks to Paolo Di Tommaso and Evan Floden about what happened in those 10 years, and what makes Nextflow so special.
In this News and Views episode, Chris Hakkaart and Marcel Ribeiro-Dantas discuss the hottest topics in the Nextflow world.
In this News and Views episode, Chris Hakkaart and Marcel Ribeiro-Dantas discuss the hottest topics in the Nextflow world.
In this News and Views episode, Chris Hakkaart and Marcel Ribeiro-Dantas discuss the hottest topics in the Nextflow world.
In this News and Views episode, Phil Ewels, Chris Hakkaart, and Marcel Ribeiro-Dantas discuss the hottest topics in the Nextflow world.
In this News and Views episode, Phil Ewels, Chris Hakkaart, and Marcel Ribeiro-Dantas discuss the hottest topics in the Nextflow world.
Rob Lalonde of Seqera Labs interviews Robert Petit, a senior bioinformatics scientist at Wyoming Public Health Laboratory. In this interview, Rob and Rob discuss public health challenges unique to Wyoming, genomic surveillance, the Bactopia pipeline, and the latest fashion trends among leading bioinformaticians in the state.
In this News and Views episode, Phil Ewels, Chris Hakkaart, and Marcel Ribeiro-Dantas discuss the hottest topics in the Nextflow world.
In this Podcast, Rob Lalonde, CCO of Seqera Labs speaks with Dr. Evan Floden, CEO and co-founder of Seqera Labs. Rob and Evan talk about the history of Nextflow, Evan's journey as the co-founder of a start-up, Breaking Bad, and the future of bioinformatics. Evan also provides a live demo of Nextflow Tower.
In this Podcast, Rob Lalonde of Seqera Labs speaks with Cedric Notredame, head of the Notredame Lab at the Centre for Genomic Regulation in Barcelona, Spain. In this far-ranging discussion, Rob and Cedric talk about cloud, pipelines, and trace the evolution of Nextflow from its early days as a research project to its current role in the global COVID effort.
In this podcast, Rob Lalonde of Seqera Labs speaks with Lorena Pantano, head of Computational Biology at NextRNA, a firm leading the next revolution in RNA-directed therapeutics located in Cambridge, Massachusetts. In this fascinating discussion, Rob and Lorena talk bioinformatics, life in a startup, and women in technology.
In this Podcast, Rob Lalonde speaks with Nils Homer, founding partner at Fulcrum Genomics. Nils shares his unique perspectives on breaking into the bioinformatics industry, advances in technology and tools, and what to expect in the next three to five years.
In this Podcast, Rob Lalonde speaks with Phil Ewels of SciLifeLab Sweden, part of NGI Stockholm. In this fascinating discussion, they cover everything from nf-core to future bioinformatics challenges.
