Version v24.10.3

Get started

Overview
Installation
Your first script

Running pipelines

Command line
Configuration
Executors
Caching and resuming
Reports
Plugins

Developing pipelines

Scripts
Working with files
Processes
Channels
Workflows
Modules
Notifications
Secrets
Sharing pipelines
Migrating from DSL 1

Software dependencies

Git
Containers
Conda environments
Spack environments
Wave containers

Compute & storage

Amazon Web Services
Amazon S3
Azure
Google Cloud
Kubernetes
Fusion file system

Reference

Syntax
CLI reference
Configuration options
Environment variables
Feature flags
Standard library
Process reference
Channel factories
Operators

Contributing

Overview
Workflow Diagram
Packages
Plugins

Tutorials

Using Nextflow with Flux
Understanding task resource metrics

Nextflow is developed by:

Nextflow

Index
Edit on GitHub

Index

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