Version dev (7d3cb2b7e)

Get started

Overview
Installation
Environment setup
Your first script

Running pipelines

Command line
Configuration
Executors
Caching and resuming
Reports
Plugins

Developing pipelines

Scripts
Working with files
Processes
Channels
Workflows
Modules
Notifications
Secrets
Sharing pipelines
VS Code integration

Software dependencies

Git
Containers
Conda environments
Spack environments
Wave containers

Compute & storage

Amazon Web Services
Amazon S3
Azure
Google Cloud
Kubernetes
Fusion file system

Reference

Syntax
CLI reference
Configuration options
Environment variables
Feature flags
Standard library
Process reference
Channel factories
Operators

Updates

Updating Nextflow
Updating Nextflow syntax
Migrating from DSL1

Contributing

Overview
Workflow Diagram
Packages
Plugins

Guides

Spot Instance failures and retries
Understanding task resource metrics
Using Nextflow with Flux

Nextflow is developed by:

Nextflow

Index
Edit on GitHub

Index

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