Nextflow Camp 2019 Program

Draft program for the Nexflow Camp (times and activities may be changed in the final line-up due to unforeseen exigencies).

Thursday, 19 September

9.00 - 9.10 Welcome & introduction
9.10 - 9.45 nf-core community updates
Phil Ewels
Bioinformatics Team Leader, SciLifeLab, Sweden

[slides] [video]
9.45 - 10.20 Migrating legacy workflows to Nextflow
Alex Peltzer
Bioinformatics Research Scientist, Quantitative Biology Center, Germany
10.20 - 10.45 Scientific workflows beyond the Ivory Tower
Evan Floden
Seqera Labs, Centre for Genomic Regulation, Spain
10.45 - 11.15 Coffee break
11.15 - 13.00 Tutorial - Getting started with nf-core
Phil Ewels
Bioinformatics Team Leader, SciLifeLab, Sweden
13.00 - 14:00 Lunch
14.00 - 14.35 Keynote - Accelerating Bioinformatics with Nextflow and the Cloud
Sam Minot
Fred Hutchinson Cancer Research Center, USA
14.35 - 15.10 Governance & Guardrails: Managing your AWS account to ensure your data is secure and your budget is safe
Lee Pang
Amazon Web Services, USA
15.10 - 15.22 Nextflow and human microbiome: from data to insights
Francesco Strozzi
Enterome Bioscience, France
15.10 - 15.22 NF-web: a web interface for Nextflow
Anton Khodak
Wellcome Sanger Institute, UK
15.34 - 16.05 Coffee break
16.05 - 18.00 Tutorial - Running Nextflow on AWS Batch
Lee Pang
Amazon Web Services, USA
18.00 - 20.00 Open - networking
20.00 Event dinner

Friday, 20 September

9.30 - 10.05 What's new in Nextflow: DSL-2 and beyond
Paolo Di Tommaso
Seqera Labs, Centre for Genomic Regulation, Spain
10.05 - 10.40 U-DAWS: Developing and maintaining reproducible workflows for bioinformatics data
Venkat Malladi
UT Southwestern, USA
10.40 - 11.15 Coffee break
11.15 - 11.40 Pay As You Go Cloud Bioinformatics for Pathogens
Anthony Underwood
Ben Taylor
Centre for Genomic Pathogen Surveillance, Wellcome Trust Sanger Institute, UK
11.40 - 13.00 Tutorial - Deep dive into Nextflow DSL-2
Paolo Di Tommaso
Seqera Labs, Centre for Genomic Regulation, Spain
13.00 - 14:00 Lunch
14.00 - 14.25 Robust and reproducible pipelines to support routine clinical diagnostic and research projects in oncology
Matthias Monfort
Institut Curie, France
14.25 - 14.50 FA-nf - A Bioinformatics pipeline for functional annotation implemented in Nextflow
Anna Vlasova
Institute of Molecular Pathology, Austria
Toni Hermoso
Centre for Genomic Regulation, Spain
14.50 - 15.10 Nextflow at Chan Zuckerberg Biohub
Olga Botvinnik
Chan Zuckerberg Biohub, USA
15.10 - 15.30 Parallel and scalable workflow for the analysis of RNA modifications using Oxford Nanopore direct RNA sequencing
Luca Cozzuto
Centre for Genomic Regulation (CRG), Spain
15.30 - 16.00 Coffee break
16.00 - 17.30 Tutorial - DolphinNext: A graphical user interface for distributed data processing of high throughput genomics
Alper Kucukural
Onur Yukselen
UMass Medical School, USA
17.30 - 17.45 Closing remarks

Registration

To attend Nextflow Camp 2019 register at this link.